OxBacNet – a networking group, linking bacteriologists working in Oxford.

Organised by Judith Armitage (Dept. of Biochemistry, judith.armitage@bioch.ox.ac.uk) and Philip Poole (Dept.of Plant Sciences, philip.poole@plants.ox.ac.uk), we aim to have three meetings a year, held on Wednesday afternoon of fourth week each term. There will be research talks by senior and junior scientists, followed by opportunities for networking (and possibly even pizza!)

OxBacNet is grateful for the support of Oxford’s Bacteriology Project Leaders.

Next meeting: Trinity term, Wednesday May 19th 2021

OxBacNet meetings will be held remotely until we are able to meet in person again.

Previous meetings:

February 2021

2pm Chair: Philip Poole (Dept. of Plant Sciences)
2pm Tim Walsh, Dept. of Zoology timothy.walsh@zoo.ox.ac.ukCOVID versus AMR – lessons we can learn
2.30pm Ronelle Roth, Dept. of Plant Sciences ronelle.roth@plants.ox.ac.uk Maintaining good relations: siRNA-mediated regulation of arbuscular mycorrhizal symbiosis in tomato
3.15pm Charlotte Melia, Sir William Dunn School of Pathology charlotte.melia@path.ox.ac.uk In situ cryo-EM of Pseudomonas aeruginosa cell-cell junctions reveals a target for bacterial biofilm inhibition
3.30pm Laura Clark, Dept. of Plant Sciences laura.clark@plants.ox.ac.ukWhere should I invest my resources? How host plants regulate interactions with bacterial symbionts
3.45pm Harrison Steel, Dept. of Engineering Science harrison.steel@eng.ox.ac.uk Developing robotic tools that enable real-time control of biological experimentation
4pm Nathalie Reichmann, Dept. of Biochemistry nathalie.reichmann@bioch.ox.ac.uk   Complement-mediated killing: a bacterium’s point of view

No meetings were held in Trinity term 2020 or Michaelmas term 2020.

February 2020

2pm Chair: Philip Poole (Dept. of Plant Sciences)
2pm Tanmay Bharat Sir William Dunn School of Pathology tanmay.bharat@path.ox.ac.uk Structural cell biology of prokaryotic surface layer proteins
2.30pm Pedro Moura Alves Ludwig Cancer Institute pedro.mouraalves@ludwig.ox.ac.uk Spying on bacterial quorum: infection dynamics under surveillance by the host AhR
3pm Paulo Bettencourt The Jenner Institute paulo.bettencourt@ndm.ox.ac.uk Identification of peptides presented by MHC for vaccines against tuberculosis
3.30pm Tea
4pm Chair: Judy Armitage (Dept. of Biochemistry)
4pm Sarah Hollingshead Sir William Dunn School of Pathology sarah.hollingshead@path.ox.ac.uk How to hold on to your plasmid
4.15pm Keith Cassidy Dept. of Biochemistry/STRUBI ckcassidy1@gmail.comStructure and dynamics of the E. coli chemotaxis core signalling complex
4.30pm Andrzej Tkacz Dept. of Plant Sciences andrzej.tkacz@plants.ox.ac.uk  A holistic approach to the plant microbiome
4.45pm Abul Tarafder Sir William Dunn School of Pathology abul.tarafder@path.ox.ac.uk  Phage liquid crystalline droplets encapsulate and protect bacteria
5pm New Starter Session: Lois Ogunlana Dept. of Zoology lois.ogunlana@balliol.ox.ac.uk Investigating the fitness effects of mobile colistin resistance genes
5.15pm New Starter Session: Anna Dewar Dept. of Zoology anna.dewar@wolfson.ox.ac.uk A comparative approach to understanding selection on extracellular secretion
5.30pm Pizza and beer in Dept. of Plant Sciences Common Room

May 2019

2pm Chair: Philip Poole (Dept. of Plant Sciences)
2pm Kayla King kayla.king@zoo.ox.ac.uk (Dept. of Zoology) Killers and protectors: rapid microbial evolution across the parasitism-mutualism continuum
2.30pm Valentine Legage valentine.lagage@bioch.ox.ac.uk (Dept. of Biochemistry) Bacterial mutation dynamics in response to oxidative stress
3pm Tim Haskett tim.haskett@plants.ox.ac.uk  (Dept. of Plant Sciences) Controlling plant-microbe interactions with rhizopine signalling
3.30pm TEA in Dept. of Plant Sciences Common Room (area at the back reserved for us)
4pm Chair: Judy Armitage (Dept. of Biochemistry)
4pm Elisa Granato elisa.granato@zoo.ox.ac.uk (Dept. Of Zoology) Counter-attack at any cost: self-lysis in bacterial warfare
4.30pm Rafael Da Silva Custodio rafael.dasilvacustodio@path.ox.ac.uk (Dunn School of Pathology) Commensal Neisseria utilises a Type VI secretion system to kill N. meningitidis
5pm Oliver Meacock oliver.meacock@balliol.ox.ac.uk (Dept. of Zoology) The tortoise and the hare: how collective behaviours within bacterial biofilms select for cells that move more slowly
5.15pm New Starter Session: Reza Rohani reza.rohani@eng.ox.ac.uk (Dept. of Engineering) Vibrio natriegens as a chassis for synthetic biology
5.30pm Pizza and beer in Dept. of Plant Sciences Common Room

February 2019

2pm Chair: Colin Kleanthous (Dept. of Biochemistry)
2pm Rut Caballido-López rut.carballido-lopez@inra.fr (Micalis Institute, Paris) Shaping bacteria: dynamics and morphogenetic function of actin-like MreB proteins
2.30pm Jim Naismith naismith@strubi.ox.ac.uk (STRUBI) Making hard molecules using bacterial enzymes
3pm Carmen Sanchez-Cañizares carmen.sanchez-canizares@plants.ox.ac.uk(Dept. of Plant Sciences) Control of bacterial nitrogen and carbon metabolism by a PTS-regulated switch
3.30pm TEA in Dept. of Plant Sciences Common Room (area at the back reserved for us)
Chair: Philip Poole (Dept. of Plant Sciences)
4pm Sandip Kumarsandip.kumar@bioch.ox.ac.uk(Dept. of Biochemistry) Imaging organization in the Escherichia coli outer membrane
4.30pm Helen Alexanderhelen.alexander@zoo.ox.ac.uk(Dept. of Zoology) Stochastic bacterial population dynamics prevent the emergence of antibiotic resistance
5pm Beatriz Jorrínbeatriz.jorrin@plants.ox.ac.uk(Dept. of Plant Sciences) Broad host range tool to label synthetic bacterial communities
5.20pm Pizza and beer in Dept. of Plant Sciences Common Room

October 2018

2pm Judy Armitage (Dept. of Biochemistry) Short introduction/announcements
Chair: Ruth Cohen Khait (Dept. of Biochemistry)
2.10pm Peijun Zhang peijun@strubi.ox.ac.uk(STRUBI) Tales of Bacterial Chemosensory Arrays
2.40pm Hee-Jeon Hong hee-jeon.hong@brookes.ac.uk (Dept. of Biological and Medical Sciences, Oxford Brookes)Functional Genomics of Bioactive Secondary Metabolites in Actinomycetes
3.10pm Paul Rutten paul.rutten@biodtp.ox.ac.uk(Dept. of Plant Sciences) How does oxygen regulation prepare Rhizobium for life in nodules?
3.25pm Catherine Fan catherine.fan@wolfson.ox.ac.uk (IBME) Zombie Cells: a novel chassis for synthetic biology
3.40pm TEA in Dept. of Plant Sciences Common Room (area at the back reserved for us)
Chair: Judy Armitage (Dept. of Biochemistry)
4.10pm Keith Jolley keith.jolley@zoo.ox.ac.uk (Dept. of Zoology) Open-access bacterial population genomics: PubMLST and the BIGSdb genomics platform
4.25pm Jamie Wheeler james.wheeler@linacre.ox.ac.uk (Dept. of Zoology) How do bacteria navigate through developing biofilms?
4.40pm Stephan Uphoff stephan.uphoff@bioch.ox.ac.uk (Dept. of Biochemistry) Imaging real-time dynamics of mutagenesis in single cells
5.10pm Takuya Machida takuya.machida@chem.ox.ac.uk (Dept. of Chemistry) Tunicamycin analogues for developing new class of antibiotics
5.25pm Nattapong Sanguankiattichai nattapong.sanguankiattichai@biodtp.ox.ac.uk  (Dept. of Plant Sciences) Pseudomonas syringae produces an inhibitor of plant defence-related b-galactosidase
5.40pm Pizza and beer in Dept. of Plant Sciences Common Room


May 2018

Chair: Philip Poole (Dept. of Plant Sciences)
2pm Wei Huang wei.huang@eng.ox.ac.uk(Dept. of Engineering) From single cell to synthetic biology
2.30pm Colin Kleanthous colin.kleanthous@bioch.ox.ac.uk (Dept. of Biochemistry) Spatiotemporal organization of the bacterial outer membrane and its consequences
3pm Susan Lea susan.lea@path.ox.ac.uk(Dunn School of Pathology) Using structure to dissect function in bacteria-host interactions
3.30pm TEA in Dept. of Plant Sciences Common Room
Chair: Emma Sadler (Dept. of Biochemistry)
4pm Marcela Mendoza-Suárez marcela.mendozasuarez@plants.ox.ac.uk (Dept. of Plant Sciences) Identifying competitive and effective rhizobial strains: Getting to the root of the problem
4.15pm Alex Orlek alex.orlek@wolfson.ox.ac.uk (Nuffield Department of Medicine) An in silico tool for comparative analysis of bacterial plasmids using high-throughput sequencing data
4.30pm Ana Cehovin ana.cehovin@path.ox.ac.uk  (Dunn School of Pathology) Novel Neisseria gonorrhoeae lineages with high prevalence of resistance plasmids: implications for plasmid maintenance
4.45pm Rachel Wheatley  rachel.wheatley@univ.ox.ac.uk  (Dept. of Plant Sciences) Fitness determinants in Rhizobium-legume symbioses
5pm Frederic Lauber frederic.lauber@bioch.ox.ac.uk (Dept. of Biochemistry) and Justin Deme justin.deme@path.ox.ac.uk (Dunn School of Pathology) Structural studies of bacterial secretion systems
5.30pm Pizza and beer in Dept. of Plant Sciences Common Room


Feb 2018

Chair: Philip Poole (Dept. of Plant Sciences)
2pm Renier van der Hoorn renier.vanderhoorn@plants.ox.ac.uk (Dept. of Plant Sciences) Molecular dialogs at the plant-pathogen interface
2.30pm Christoph Tang christoph.tang@path.ox.ac.uk  (Dunn School of Pathology) Title TBC
3.pm Ian Thompson ian.thompson@eng.ox.ac.uk  (Dept. of Engineering) Engineering Microbial Communities
3.30pm TEA in Plant Sciences Dept. Common Room
Chair: Beatriz Jorrín (Dept. of Plant Sciences)
4pm Lindsay Baker lindsay@strubi.ox.ac.uk (STRUBI) Native Membrane Structural Biology:  A hybrid approach to study bacterial membrane proteins across resolutions in their native environment
4.15pm Vinoy Ramachandran vinoy.ramachandran@plants.ox.ac.uk (Dept. of Plant Sciences) How rhizobia attach to and colonise legume roots
4.30pm Jun Fan jun.fan@physics.ox.ac.uk (Dept. of Physics) Super-resolution imaging of transcription organisation in different physiological states
4.45pm Daniel Unterweger daniel.unterweger@zoo.ox.ac.uk  (Dept. of Zoology) Bacterial warfare during chronic infection
5pm Marie-Louise Francis (Dept. of Biochemistry) marie-louise.francis@stx.ox.ac.uk Colicin translocation through the E. coli cell envelope
5.15pm Paulo Bettencourt paulo.bettencourt@ndm.ox.ac.uk (The Jenner Institute) Identification of Mycobacterial Antigens Presented by MHC Molecules from Infected Macrophages using Mass Spectrometry
5.35pm Pizza and beer in Plant Sciences Dept. Common Room